fileio

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• 1 - read_header slow for ctf_shm
• 30 - fix read_mri
• 52 - old reading functions should be moved to compat folder
• 53 - redesign the filetype detection
• 64 - fileio module function calls public function fetch_data
• 72 - missing ft_ prefix to filetype calls in read_neuralynx_ds.m
• 76 - unable to read neuralynx nev
• 78 - Toolbox for Chieti data not available
• 80 - LFP dataset with tsq extension cannot be read
• 82 - volumewrite_spm should go into fileio
• 85 - "read_zebris.m" not found in "fileio/private"
• 87 - Error in load ASA electrode-layout
• 88 - FILE-IO EDF+ and BDF file reading
• 92 - problem reading *.mnc file
• 107 - Checking for unique channel names is incompatible with not generating fake channel names for fMRI
• 108 - reading in of ctf-header with headerformat ctf_ds outputs a lot of stuff to the screen, making it slow
• 155 - ft_read_data returns data in int32 format
• 174 - implement EDF and GDF format in ft_write_data
• 175 - mex files missing for read_16bit
• 177 - Missing (PowerPC) MEX files
• 194 - no filetype compatibility-function in compat-folder
• 195 - no ft_ prefix for filetype in low level (neuralynx) read-functions
• 200 - read_sbin_data does not check whether fseek failed
• 258 - improve support for plexon nex files
• 322 - plexon nex with different sampling rate are incorrectly read
• 323 - read_plexon_nex incorrect for strobed channel with triggers
• 410 - read_eep_cnp does not work on Linux machines (Donders mentat)
• 424 - Problem with event values in ASA data
• 456 - Add EGI MFF data format
• 460 - fclose(fid) missing in read_micromed_trc.m
• 483 - Re: [FieldTrip] FT doesn't close .fif files
• 506 - Suggestion for reading gdf events
• 511 - warning using ft_write_volume
• 564 - something goes wrong with reading tutorial dataset, any recent changes in fileio?
• 573 - improve event handling for neuroscan cnt and eeg formats
• 580 - ft_filetype.m contains references to the nonexistent and mysterious "F.C. Donders Centre"
• 629 - implementation problems with epoched egi_mff format
• 655 - ft_defintrial at central storage of donders crashes after last nights update
• 679 - QuikCap 128 NSL layout
• 681 - ft_read_vol cannot read from a neuromag fif file
• 696 - off format writer
• 713 - implement support for Windaq data format
• 720 - add Vista mesh reader writer to ft_r/w_headshape
• 731 - read digital trigger on neuromag system
• 771 - ft_read_mri should behave consistent w.r.t. transformation matrix
• 817 - Error when attemping read_sbin_events on a file without events
• 821 - read_combined_ds (fileio/private) calls read_data, rather than ft_read_data
• 883 - bdf files persisting in memory
• 884 - ft_read_event adds the undefined and nonstandard urevent
• 886 - ft_read_mri requires SPM8 toolbox
• 953 - the channel type and the physical units should be the output of ft_read_header
• 955 - move source code for vista mex files to fieldtrip/src
• 1004 - XXX2grad functions should convert to new sensor representation directly
• 1032 - make the check on the existence of the file in ft_read_xxx consistent
• 1038 - the reading functions can support tgz and zip datasets, unzip on the fly
• 1043 - channelposition.m about line 73: subesequent code to FIXME fails Yokogawa systems
• 1068 - ft_read_mri causing a system error
• 1081 - ft_read_header.m eyelink ascii 2000Hz data reading error
• 1094 - header caching for read_biosig_data.m
• 1118 - reading ctf data from a dataset where all meg channels are disabled fails with the routines in external/ctf
• 1120 - resolve inconsistency in reading balancing coefficients
• 1143 - begsample and endsample not processed for gdf in ft_read_event
• 1157 - fileio/README describes missing files base64.{c,h}
• 1169 - can low-level fileio know how to read only requested channels?
• 1170 - neuroprax import functionality fails when selecting channels
• 1177 - Using of EGI electrode layout throws a Yokogawa-related warning
• 1197 - Problem with reading Neuroscan 4.5 format file
• 1206 - documentation ft_datatype_raw incomplete
• 1225 - "could be Yokogawa system" warning triggered repeatedly
• 1227 - implement gifti-format and nifti-format for ft_sourcewrite
• 1233 - typo in read_eeglabdata?
• 1240 - ft_read_data call ft_filetype over and over again in call to ft_getopt
• 1256 - because of caching of data and header information wrong data can be read
• 1262 - Problem reading fcdc_buffer_offline filetypes (version 20111231)
• 1266 - GDF files are written in blocks of 1 gig (biosemi2ft buffer), but not concatinated when read
• 1281 - make reading of GDF events and channels more memory efficient
• 1296 - ft_read_mri doesn't work for .mgz files under a PC
• 1299 - gtec_mat support disappeared from ft_read_header in svn merged branch
• 1311 - copy the improved 16/32 bit Neuroscan CNT detection from EEGLAB
• 1327 - reading ASC eyelink files - doesn't recognize 'em as such
• 1339 - wrong number of sensors from bti2grad
• 1353 - Problem with ft_chantype for Neuromag
• 1354 - uint64 object is not needed any more on matlab 2011b
• 1356 - check whether the Neuromag Triux MEG system is fully supported
• 1377 - implement support for reading NetMEG data
• 1404 - implement support for the neurosim spikes and signals file format
• 1407 - finalize the egi_mff implementation
• 1412 - For .cnt files, ft_read_header() of different versions produce different nSamples
• 1427 - allow egi_mff to be read when one of the files in the directory/package is given as filename
• 1438 - reading 4D data fails for empty room data
• 1468 - read_brainvision_eeg.m memory problems
• 1479 - reading in polhemus locations; yokogawa warning and extra .chanpos field
• 1489 - implement support for neurorighter data format
• 1490 - Problem with reading Neuroscan 16bit file (again)
• 1496 - fixsampleinfo bug with timelock data without trials
• 1509 - Wrong scaling for Brainvision data (from Christophe Phillips)
• 1512 - read_nex_event sample + 1 missing
• 1534 - spass2fieldtrip sample rate hard coded
• 1540 - ReadHeader has to be moved from fieldtrip/private to fileio/private
• 1549 - Add patch for ft_read_header/data for TNO-specific gTec MATLAB format
• 1567 - improve the detection of BrainVision *.dat files
• 1570 - ft_filetype overlapping between eyelink and itab MEG header *.asc file extension
• 1572 - Fix for empty channels in ft_read_header.
• 1618 - Problem with a BV variant
• 1689 - allow exporting of connectivity networks to a common file format
• 1702 - ft_filetype has difficulties automatically detecting 4d-files
• 1724 - ft_read_headshape does not support mne_tri and mne_pos fileformats
• 1725 - replace ft_prepare_atlas by ft_read_atlas
• 1747 - the reading functions can support URL syntax, download on the fly
• 1748 - read_neurosim_spikes is slow
• 1757 - BQ* ref sensors not found in ft_chantype
• 1770 - improve the neuralynx NRD implementation
• 1785 - implement support in ft_read_sens for the waveguard electrode file format
• 1795 - integrate new plexon readers into fieldtrip/fileio
• 1808 - wrong counter variable in elseif branch in loop defining the grad-struct, n instead of k
• 1825 - read_plexon_nex and plexon_nex in ft_read_data
• 1836 - ft_write_headshape has to be extended to allow the export of FEM meshes
• 1849 - second output argument not initialized for read_ctf_cls
• 1851 - create test script for dataunits in ft_read_header and data
• 1867 - enhancement to reading events from neuromag data
• 1876 - implement support for the PALS B12 atlas in ft_read_atlas
• 1877 - ft_filetype will recursively check all subfolders
• 1889 - trialfun_general does not work on neurosim data, caused by ft_read_header
• 1899 - ft_read_mri -- errors when reading neuromag fiff mri files other then 1mm resolution
• 1913 - recompile the ANT libeep mex files on all platforms
• 1914 - implement support for the babySQUID MEG system in Boston
• 1924 - implement the deymed EEG file format
• 1955 - implement native support for the NIRS machine at the DCC
• 1960 - some 'rising' events are not found for NXE data
• 1998 - neuralynx CSC problem due to gaps in the acquisition
• 2020 - improve mne2grad - sample the leadfield on more points and integrate over them
• 2023 - .nex files not correctly read out
• 2029 - Speed problems after the latest read_neuralynx_ncs update
• 2035 - reading of events from NEX gives error if file contains no events
• 2036 - small bug fixes in exporting fiff: fileparts returns dot and dataout does not exist (#1)
• 2038 - bugs in fieldtrip2fiff
• 2039 - Reading *.smr files
• 2046 - ft_read_spike on nex file results in spaces in event.type
• 2060 - cannot read neuralynx events.nev in the absence of LFP channels
• 2064 - Synchronization pulses for 4D MEG (Marseille & Glasgow)
• 2068 - Brainvision problems
• 2086 - ft_databrowser hangs with data output from ft_appenddata
• 2093 - NEX file reader errors
• 2096 - implement cifti import/export function
• 2100 - ctf mri version 4.1 is not supported
• 2114 - make coordsys and coordinates consistent
• 2125 - File not close in read_biosemi_bdf.m
• 2133 - egi_mff_v2 reading causes global variables to be deleted
• 2136 - ft_senstype mis-classification
• 2151 - MFF might have discontinuous data
• 2153 - Check read_brainvision_eeg.m
• 2154 - Check read_brainvision_eeg.m
• 2163 - bug in read_neuralynx_nse function dur to variable record size
• 2168 - ft_read_headshape is inconsistent with reading from one or multiple freesurfer files
• 2169 - implement support for freesurfer curvature
• 2170 - ft_read_event changed for neuromag
• 2188 - enhancement: implement support for Localite marker positions (eeg-electrodes and tms-coil location)
• 2210 - EGI header
• 2212 - reading egi .raw data with no events not possible with ft_read_header
• 2219 - reading 4D header with empty label
• 2231 - old md4 approach for reading 4D data fails
• 2250 - read_sbin_header breaks when reading events
• 2272 - Cannot use ft_read_header for .cnt files
• 2274 - ft_read_event for neuralynx Events.nev file
• 2275 - Cannot use ft_read_event for .trg files
• 2276 - implement/wrap around neuroconn import
• 2303 - reading generic EEG files fails due to error message from ft_senslabel
• 2323 - read EDF does not use gain when negative
• 2333 - Bug in ft_read_data
• 2345 - allow trigger values to be represented either as individual bits or as words
• 2370 - implement support for reading 3D facial scans in ply format
• 2389 - 4D-BTi-EEG channels are not recognized with our data
• 2390 - implement support for the XDF data format
• 2391 - ft_read_event version 8859
• 2396 - merge ft_import_surf into ft_read_headshape
• 2409 - change of syntax in bitcmp
• 2415 - Cannot read event data from biosemi_bdf
• 2432 - dataset2files throws error if format is empty
• 2435 - error: different sampling rates in continuous data not supported
• 2462 - ft_preprocessing crashes when reading brainvision dataset
• 2466 - MOEGI - mother of all EGI MFF bugs
• 2480 - Backward compatibility with TRY/CATCH ME
• 2486 - provide transition for users from egi_mff version 2 to version 3 file format
• 2489 - chantype unknown when reading fif file with only a couple of channels
• 2499 - ft_senstype problems with 1020 labels
• 2506 - read_zebris.m
• 2525 - ft_read_event only considers event types "input" in eyelink ascii data
• 2568 - ft_selectdata uses ~ in output variables
• 2569 - windaq data cannot be read on a matlab2013a machine
• 2575 - Setting channel types based on labels
• 2649 - implement event writing for BrainVision eeg/vhrd/vmrk
• 2679 - ft_read_sens cannot cope with datasets containing both EEG and MEG
• 2682 - implement support for the neuroscope file format
• 2690 - read_sbin_header.m, unexpected bracket
• 2702 - Too many different types in ft_chantype
• 2734 - initial CIFTI io tests fail
• 2735 - ft_write_cifti fails for dtseries if there is only a single time point
• 2740 - QuikCap 32 10-20 layout
• 2741 - fix cifti indexing issue with missing data on medial wall
• 2746 - loadcnt sometimes behaves weird by trying to jump to a non-integer valued file pointer
• 2767 - improve support for averaged neuroscan fif files
• 2794 - implement support for the KRISSMEG data format
• 2806 - ft_read_cifti: ask permission to build in support for passing LabelTable info to output for dense-label files
• 2808 - reading the last sample from a neuromag fif file returns 0
• 2811 - Problem with reading sfp file with headshape points
• 2859 - ft_read_header returns wrong number of samples for EGI data (NetStation 4.5.4)
• 2865 - ft_read_cifti has problems with .dlabel files that have more than 1 NamedMap
• 2887 - return all channels from an EDF file with multiple sampling rates
• 2888 - filetype fcdc_buffer_offline reading problems
• 2893 - reading fails for parcellation dconnseries generated by wb_command
• 2894 - Error while reading Neuromag data - no data in this range
• 2908 - implement egi_mff writing
• 2909 - improve data representation for CIFTI dscalar files
• 2918 - support reading and writing of BrainVision BVEF electrode position files
• 2924 - use neuralynx mex files
• 2953 - ft_read_cifti had undefined variable "data format"
• 2954 - Bug when reading a subset of channels from an EDF file
• 2977 - datset unusable after call of ft_definetrial
• 2987 - support user specification of analog trigger channels, e.g. in EDF files
• 2998 - implement support for the Tobii eye tracker
• 2999 - implement support for NIRS ISS Imagent data format
• 3027 - improve support for NIRS data from Homer
• 3042 - implement support for reading/converting brainstorm cortical surface+labels
• 3044 - problem reading past the end of the file with EDF
• 3046 - Syntax error in read_tobii_tsv.m
• 3060 - ANT EEProbe: new files not supported
• 3061 - implement support for output files from structure.io sensor 3D scanner
• 3092 - recognize label and unit size for micromed data
• 3101 - implement support for the TMSi poly5 format
• 3113 - kiel workshop issues - torso MRI
• 3126 - implement support for the NeurOne EEG file format
• 3136 - EDF Nsamples in hdr can be noninteger due to calculation using fsample and duration instead of nsamples in file header
• 3154 - Elekta MEG channel selection broken
• 3166 - Bug with eep_trg
• 3179 - merge read_layout between cosmo and fieldtrip
• 3201 - ft_read_header and/or ft_read_sens cannot get elec and grad information
• 3202 - improve support for Tucker Davis Technologies (TDT) files
• 3207 - support reading annotations from an EDF+ file
• 3239 - ft_read_event cannot import from .nex files where any variables have 0 timestamps
• 3263 - MNE coil orientation is incorrectly calculated (translation applied)
• 3280 - electrode locations are not read from CTF *.ds res4 file
• 3286 - bioimage suite electrodes are displaced
• 3297 - reading triggers from CTF275 data from the new acquisition computer fails
• 3307 - bitcmp error in read_trigger (Matlab 2014b)
• 3360 - bug in ft_read_header.m in blackrock_nsx section
• 3368 - error writing .gdf (or .eeg) data
• 3369 - implement a elekta neuromag fif log file reader
• 3373 - implement neuromag electrode file format reading and writing
• 3388 - implement auto-appending for Elekta fif files
• 3438 - improve support for SKANECT files
• 3445 - magnes 3600 issue with reference coil locations in file
• 3455 - Reading EDF breaks on syntax errors and more