Won't fix

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• 19 - the length of a vector is sometimes used, whereas numel is more robust (before/after vectorization)
• 26 - implement cfg.precision for all functions
• 29 - fix subspace projection in beamformer_dics and beamformer_lcmv
• 53 - redesign the filetype detection
• 55 - speed up read_event for realtime reading from CTF shm
• 90 - exclude external/xxx from fieldtrip-lite on ftp server
• 102 - cfg.inputfile for ft_prepare_bemmodel with 3 input options
• 110 - tcpserver thread cannot be stopped on windows
• 111 - discover thread does not want to start when compiled on matlab2009+msvc2008
• 118 - make ft_prepare_layout detect identical channel locations
• 126 - High-pass filter explodes for no visible reason
• 137 - implement udpserver
• 142 - peer should announce timavail=0 for zombie and master
• 145 - documentation in peer.m should be more general introduction
• 147 - improve help in functions by linking to wiki documentation
• 155 - ft_read_data returns data in int32 format
• 177 - Missing (PowerPC) MEX files
• 183 - include job number in rethrown error inside peerget
• 199 - ft_sourceanalysis with lcmv and precomputed filters and single trial input does not output a pow-field
• 223 - peermaster and peerslave don't launch
• 227 - grids containing leadfields should contain a label to make the interpretation of the leadfield less ambiguous
• 256 - ft_clusterplot cannot plot TFR clusters
• 258 - improve support for plexon nex files
• 268 - remove peer from list in case open_tcp_connection error
• 269 - problem in printing job information
• 276 - add support for channel-selection to multiplotCC
• 293 - source statistics on timeseries (source.mom) does not work
• 296 - enginetimeout and zombietimeout should be configurable on the command line
• 298 - create mex file implementation of keyval
• 300 - link the fieldtrip bugzilla to the debian bugzilla
• 327 - engines are not efficiently reused
• 331 - smartcpu should switch off the "smallest" peerslave first
• 332 - the sluggishness in the peerslave smartxxx estimates has to be reimplemented
• 333 - smartcpu switching is inconsistent
• 336 - add explicit checks for non-used cfg options in ft_freqanalysis
• 370 - private/prepare_time_freq_data calls fixdimord
• 373 - new function related to source space: ft_reducepatch
• 383 - selecting a subset of trials from source data (pcc mom) does not work
• 384 - unpredictable crashese during peer computing
• 392 - enable rotating photo's for news item (e.g. integrated with FB)
• 395 - create faq on 'what to do when my script does not work anymore, and it worked perfectly fine in 2003'?
• 410 - read_eep_cnp does not work on Linux machines (Donders mentat)
• 415 - ft_checkcoordsys
• 425 - using trackconfig = 'on' does not work robustly
• 446 - reorganize the development/realtime documentation
• 513 - missing figures on wiki (development section)
• 523 - strange problems in a sourceanalysis pipeline
• 529 - ft_preprocessing should support padding for continuous data in-memory
• 532 - implement a ft_crossfreqanalysis function
• 542 - Speed up ft_multiplotER
• 545 - ft_selectdata should support toilim for source input
• 561 - not able to plot (topo/singleTFR nonlinear (time/freq) axis
• 571 - peer resulting in matlab crash
• 575 - neighbourselection now has option 'method' but this crashes when you call it from the stats functions
• 585 - invalid MEX file error in clusterstat
• 587 - ft_volumesegment accepts priors only for humans, default SPM options are rigid
• 597 - channel labels in meg160 software user-interface start with "000" and not with "001"
• 602 - questions in tutorials should have an answer
• 616 - multivariateanalysis tutorial should follow the documentation guidelines
• 643 - maintaining the multicast list can be made conditional on the status
• 647 - create a fieldtrip/warp toolbox
• 650 - user feedback in ft_sourceplot needs to be cleaned up
• 663 - ft_prepare_layout fails for yokogawa64_planar
• 666 - CTF system fault writing data?
• 674 - multisphere function not found
• 681 - ft_read_vol cannot read from a neuromag fif file
• 695 - development: improve visualization of MNE source reconstruction results
• 709 - create ft_connectivity_xcorr
• 712 - build in the non-homogeneous smoothing at the source level
• 729 - ft_checkdata -> fixcsd with 'sparse' -> 'full' flips the directionality with respect to convention
• 743 - using <code matlab> leads to very ugly exported pdf-files
• 745 - similar to cfg.trials and cfg.channel, functions should get an option cfg.latency
• 746 - ft_defaults does not add multivariate toolbox
• 752 - udsserver fails to start on max os x
• 768 - peermaster allowhost should not be case sensitive
• 781 - Incorrect memavail reading peerslave command line executable
• 787 - wiki pages exported to pdf do not include svg graphics
• 809 - Suggestion: Let neighbourselection calculate distances for neighbours
• 812 - ft_defaults sometimes takes very long to execute
• 818 - If no layout is given, it could be estimated using ft_senstype(data)
• 827 - ambiguity in x/y dimensions when topoplotting chan_freq data
• 836 - ft_componentanalysis crashes with method='fastica' and MEG data in input
• 849 - convention of 'directionality' in spectral transfer function is swapped wrt the other connectivity metrics
• 850 - ft_checkdata gets confused with mtmconvol input and fourier
• 851 - freqstatistics has a problem with singular dimensions in freq field?
• 871 - add axes to summary plot in ft_multiplotTFR
• 872 - implement and test statfun_glm
• 891 - ensure that the test-directory in /home/common/matlab/fieldtrip/forward/ exists
• 906 - ft_senstype does not recognize the type of sensors for some of the data on /home/common
• 910 - test_ft_preprocessing fails on 'tdt data
• 916 - read_eep_cnt does not work under linux 32bit
• 931 - ft_appendfreq fails when the data does not exactly overlap
• 934 - Matlab does not shutdown properly
• 962 - remove default cfg.demean = 'yes' in ft_componentanalysis
• 969 - ft_volumerealign interactive gui doesn't show "R" & "L" indicators
• 979 - mtmfft: cumtapcnt doesn't support variable number of tapers
• 981 - ft_headmodelplot doesn't work with a multisphere volume conduction model in the input
• 990 - Incompatibility of new function ft_prepare_neighbours?
• 998 - Convert FT tutorials into testing functions
• 1004 - XXX2grad functions should convert to new sensor representation directly
• 1008 - change cfg.frequency to cfg.foi in ft_sourceanalysis
• 1011 - ft_appenddata using the 'new' source representation?
• 1032 - make the check on the existence of the file in ft_read_xxx consistent
• 1101 - for discussion in the FT meeting
• 1118 - reading ctf data from a dataset where all meg channels are disabled fails with the routines in external/ctf
• 1127 - implement variable loading consistently
• 1136 - ft_checkconfig could support 'custom' error messages
• 1161 - we need a drop-in replacement for the randperm function
• 1167 - ft_appenddata does not work properly for freq data (when the first frequency bin contains nans?)
• 1178 - ft_channelcombination fails with 3rd input argument
• 1195 - integrate fieldtrip spike toolbox with mclust
• 1197 - Problem with reading Neuroscan 4.5 format file
• 1199 - demeaning in ft_specest_mtmconvol should be performed in time-resolved fashion
• 1200 - matlab crashing when starting to use FieldTrip
• 1211 - ft_chantype should be made faster
• 1253 - fieldtrip-bugs should be exempted from most bugzilla emails
• 1282 - alleged bug in ft_topoplotCC
• 1291 - consider to use addpref/getpref instead of the global ft_default
• 1295 - ensure consistent handling of the handedness of the volumetric data with respect to the real-world coordinate system
• 1307 - producing a layout from a bti248 grad structure results in a faulty layout
• 1321 - projectmom in ft_sourcedescriptives suboptimal for time domain methods?
• 1324 - read_trigger and read_ctf_trigger produce different output
• 1325 - positive z-axis points downwards after ft_volumerealign
• 1354 - uint64 object is not needed any more on matlab 2011b
• 1358 - functional sourcedata needs to be interpolated before plotting...
• 1367 - slow speed of niftii file creation using sourceinterpolate.m for 4D datasets
• 1397 - The tutorial about coherence has a bug
• 1401 - Add ft_artifact_shiftdetect
• 1407 - finalize the egi_mff implementation
• 1472 - tutorial for event-related cluster-permutation does not use ft_clusterplot.m
• 1479 - reading in polhemus locations; yokogawa warning and extra .chanpos field
• 1487 - the email lists have changed from @donders to @science
• 1489 - implement support for neurorighter data format
• 1499 - ft_singleplotER does not plot statistical error
• 1506 - test bug to check that the fieldtrip-bus list still works
• 1510 - BEM meshes seem to be intersecting in MEG forward model with openmeeg
• 1514 - ft_spike_select should be merged with ft_selectdata
• 1548 - spike_crossx mex file
• 1549 - Add patch for ft_read_header/data for TNO-specific gTec MATLAB format
• 1553 - add the dcc customized acticap64 and acticap32 layouts
• 1558 - trialinfo lost after artifact rejection
• 1576 - actvsblT cannot handle source data (yet)
• 1582 - The biosemi acqisition does compile not on OSX when targeting 64-bit.
• 1594 - consider whether spm_bwlabel should also be in default fieldtrip
• 1595 - symbolic link in tobi messes up svn on windows disk
• 1608 - new options for mne source reconstruction should be documented
• 1615 - qsubcellfun does not detect java runtime error
• 1633 - ft_databrowser: preproc-window
• 1645 - implement http download of code and data as alternative to ftp
• 1662 - implement support for the scirun data format and use it as FEM testcase
• 1663 - ft_statfun_roc not called properly from ft_getuserfun
• 1664 - Improve neuromag and yokogawa FAQ
• 1666 - convert the example scripts into test scripts
• 1697 - build in support for SPM12
• 1708 - ft_denoise_synthetic sets all grad.chanpos and grad.chanori to NaN
• 1721 - create and add template grads
• 1733 - implement hints for pipeline structure on wiki
• 1734 - redefining indentical trials resulting in different number of samples
• 1741 - ft_read_mri: SPM2 added by default for .mnc volumes
• 1743 - pos2dim3d disappeared?
• 1747 - the reading functions can support URL syntax, download on the fly
• 1751 - Adding the autosync SVN property does not trigger a sync.
• 1753 - allow multiple nested memtic/memtoc calls
• 1759 - ft_apply_montage: sparse matrix multiplication leads to different results than full matrix multiplication
• 1769 - qsubcellfun does not work when parentheses () are present in path
• 1771 - test_tutorial_clusterpermutationfreq only passes on odd revisions... a.k.a. 'the pulsar'
• 1774 - bug binge on 10 October 2012
• 1776 - ft_channelselection: should this produce an error when no channels are selected?
• 1803 - there is a wiki page with "known problems" that predates bugzilla
• 1839 - ft_sourceplot doesn't work for source from timelock data
• 1844 - FT "likeable" wishlist
• 1846 - ft_sourceplot returns multiple labels for one point while ft_volumelookup returns only one label for the same (voxel)point
• 1864 - test_ft_spike_phaselockstat does not exist in trunk/test, but shows up on dashboard
• 1876 - implement support for the PALS B12 atlas in ft_read_atlas
• 1882 - ft_selectdata_old fails to select frequency limits in freq subfield but not in cohspctrm subfield
• 1891 - it would be nice if qsubcellfun could evaluate private private functions
• 1898 - qsubfeval fails if there are spaces in the name of the present working directory or path
• 1915 - HERMES: connectivity analysis software
• 1934 - merge patch from googlecode for surface_intersection in branch
• 1949 - all source code in realtime/bin/win32 needs to be recompiled
• 1955 - implement native support for the NIRS machine at the DCC
• 1970 - inconsistent byte swapping in float32 for communication between Intel and Arduino (endianness)
• 1981 - consider implementing a cheby2 filter in ft_preproc_xxxfilter
• 1983 - ft_prepare_sourcemodel should support cfg.grid.unit
• 1992 - why no use spm8/canonical/avg152T1.nii instead of spm8/templates/T1.nii?
• 2000 - make a python implementation of fieldtrip
• 2007 - Proposed changes to ft_inverse_beamformer_dics
• 2015 - defining gradiometer channels in the neuromag306
• 2042 - ft_electroderealign function does not work for me with method: 'manual' and with method: 'template' & using headshape
• 2050 - visualization functionality, combining different data structures + consistent implementation
• 2057 - support non-bash shell in qsub
• 2067 - No unit conversion in ft_prepare_headmodel
• 2081 - ft_combineplanar with combinemethod='svd' should be improved for raw/timelock
• 2084 - ft_sourceanalysis should give warning if crsspctrm is missing
• 2090 - ft_rejectvisual holds the command-line while browsing trials/channels/summary
• 2094 - loreta missing?
• 2109 - Apply SSP vectors read from a raw file
• 2143 - store meanvar from runica in output of ft_componentanalysis?
• 2145 - explain options surfplot
• 2150 - buffer recording hangs when writing with mobita
• 2152 - ft_rejectvisual: also return trlsel
• 2155 - consistent use of MATLAB vs Matlab
• 2173 - create a tutorial on animal electrophysiology "burst" data
• 2183 - MNE does not allow lambda to be in percentage (e.g. cfg.mne.lambda = '5%')
• 2194 - enhancement: allow ft_databrowser to mark entire trial as artifact with single keystroke
• 2212 - reading egi .raw data with no events not possible with ft_read_header
• 2221 - problem plotting two averages at once with ft_multiplotER
• 2231 - old md4 approach for reading 4D data fails
• 2234 - bug binge august 9: reserve a room
• 2242 - make a youtube video that explains the frequency resolution FAQ
• 2243 - make a youtube video introducing the fieldtrip toolbox
• 2244 - make a youtube video explaining the various types of padding
• 2245 - make a youtube video addressing the FAQ on 50Hz line noise
• 2249 - ft_volumesegment does not return .anatomy field anymore
• 2255 - cfg.previous is very large after source statistics slowing matlab workspace managing
• 2256 - ft_componentanalysis with method = 'binica' does not work, also consider implementing 'mexica'?
• 2263 - lcmv and rv methods
• 2264 - ft_sourceinterpolate does not work on mne method
• 2288 - collect video material from hamburg2013 workshop
• 2306 - get Haiteng started as developer
• 2327 - stay consistent with cfg.parameter being mandatory for freq-data
• 2352 - cfg.statistic in ft_statistics_montecarlo
• 2367 - ft_sourceanalysis: output contains source.method, consider removing
• 2390 - implement support for the XDF data format
• 2411 - implement matching pursuit decomposition
• 2435 - error: different sampling rates in continuous data not supported
• 2451 - Matlab 2013b version bug - interacting with plotting function
• 2492 - ft_plot_topo does not support transparency mask with values other than 0 or 1
• 2493 - qsubcelfun hangs after around 12 submissions
• 2506 - read_zebris.m
• 2535 - Error in ft_apply_montage: gradiometer info not correctly selected?
• 2545 - GUIs loading stuff should use ft_progress 'gui'
• 2546 - ft_selectdata 'avgovertime' does not remove time from the resulting structures dimord
• 2547 - License checkout handling
• 2587 - follow up on the discussion about data analysis assistance within the DI
• 2601 - allow user specification of where qsubcellfun maintains it input/output files
• 2602 - document how to deal with differences in mouse head size
• 2636 - extend ft_electroderealign with automated electrode positioning for 40 electrode mouse grid
• 2637 - *_ouput.mat file not found (yet)
• 2648 - ft_specest_mtmconvol with padding should allow estimates at edge time bins
• 2651 - Inconsistency/Inaccuracy between Beamformer Tutorial and Common Filter Example Script
• 2662 - mismatch between the coordinate system in the atlas and the coordinate system in the data in ft_volumelookup
• 2677 - consider DRMAA as generic backend for qsub
• 2682 - implement support for the neuroscope file format
• 2714 - ft_databrowser displays black screen under some conditions
• 2726 - ft_math takes very long to compute operations
• 2739 - Data Alignment issue for ft_sourceplot (ortho mode)
• 2759 - matlab2014b neighbourplot interactive channel selection does not work properly
• 2765 - senstype gives inconsistent type for planar and planar_combined layouts
• 2768 - Cannot combine opacity and atlas in ft_sourceplot
• 2797 - create FAQ on ft_rejectcomponent(cfg,comp) versus ft_rejectcomponent(cfg,comp,data)
• 2801 - calling ft_stratify gives error when too many Curve Fitting Toolbox licenses are used
• 2814 - mne tutorial does double realignment and segmentation
• 2817 - bemcp output not 'sensible'
• 2824 - implement Harmony: Source Reconstruction in the Anatomical Basis of Spherical Harmonics
• 2831 - add description and summary to both ICA example scripts
• 2850 - ft_eloreta isfield(dipout,)
• 2851 - merge freq2timelock and comp2timelock into ft_checkdata
• 2883 - error('fixme: reorder data fields to match cfg.channel');
• 2889 - enhancement-add optional warning for using default values in ft_getopt
• 2903 - replace the FT findcluster function with the refactored version from LIMO
• 2908 - implement egi_mff writing
• 2919 - interactive functionality ft_prepare_neighbours broken
• 2920 - ft_databrowser: error in custom datatip string function
• 2932 - channel neighbours for Yokogawa KIT system with 208 channels
• 2949 - ft_selectdata does not work with comp (IC) data
• 2950 - ft_rejectvisual returns wrong sampleinfo for rejected trials on concatenated data
• 2957 - revamp functionality to convert between different representation of freq-domain data
• 2958 - ft_connectivity_mim: implement functionality
• 2961 - ft_selectdata: unexpected behavior of ft_selectdata when selecting across time
• 2963 - ft_freqanalysis does not support mirror padding
• 3004 - making cfg.trialdef.eventtype = '?' the default
• 3006 - document the representation and conversion between sparse and full CSD matrices
• 3015 - ft_prepare_headmodel: when calling ft_prepare_mesh, cfg.method may not be configurable for the lower-level function
• 3018 - ft_connectivity_granger: write documentation page: how NOT to compute Granger causality with spectral factorization techniques
• 3019 - error using fieldtrip functions in a gui.
• 3032 - add "restore all" button to GUI for ft_rejectvisual in summary mode
• 3085 - ft_multiplotTFR plots channel labels on top of data matrices, rather than above
• 3086 - ft_analysispipeline gives weird result on anonimized tutorial data
• 3087 - running ERF clusterstats tutorial results in quite different plots from wiki
• 3088 - ft_volumerealign shuts down Matlab when f key is pressed
• 3113 - kiel workshop issues - torso MRI
• 3114 - kiel workshop issues - FEM slow
• 3115 - kiel workshop issues - BEM failed
• 3121 - ft_databrowser channel color changes when identifying channels in viewmode = butterfly
• 3148 - test_old_ft_sourceanalysis_lcmv fails because biomag2010 data is missing
• 3187 - matlab version specific behavior of cfg-tracking (cleanup)
• 3202 - improve support for Tucker Davis Technologies (TDT) files
• 3206 - Tissue confusion in BEM headmodel tutorial
• 3224 - :Size inputs error must be integers: error in non-parametric spectral factorization of partial directed coherence
• 3233 - openGL related issues after last software upgrade of DCCN cluster
• 3236 - Problem with simbio FEM
• 3243 - cannot compile "peer" code using Makefile on OSX
• 3246 - colormap editor is not supported in ft_sourceplot with method=ortho
• 3251 - default conversion into 'cm'
• 3257 - ft_sourceanalysis: MNE with frequency domain data + lambda parameter does not use lambda
• 3279 - cfg.selectfeature doesnt work in ft_databrowser
• 3300 - Plot negativity upwards
• 3356 - ft_platform_supports breaks with optiom 'html'
• 3365 - invalid spm_bwlabel mex mac file under matlab2017b
• 3370 - Interactive use of ft_topoplotER and subplots
• 3376 - nanmean crashes after Windows update
• 3381 - host a copy of the wiki and ftp server in China
• 3410 - ft_headmodel_dipoli doesn't work
• 3421 - ft_prepare_headmodel failing on more than 5 conductivities
• 3430 - applying ft_appenddata to concatenate epochs from different blocks corrupts data
• 3454 - Function in NIRS tutotial 'ft_nirs_transform_ODs' cannot be found because the path is not added
• 3458 - padding in ft_specest_mtmconvol
• 3463 - ft_sourcestatistics does FDR correction wrong