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Bug 2618 - qsublist cannot determine pbsids when nr of jobs>999
| Status | CLOSED FIXED |
| Reported | 2014-06-20 10:29:00 +0200 |
| Modified | 2014-07-15 17:25:10 +0200 |
| Product: | FieldTrip |
| Component: | qsub |
| Version: | unspecified |
| Hardware: | PC |
| Operating System: | Windows |
| Importance: | P5 normal |
| Assigned to: | Robert Oostenveld |
| URL: | |
| Tags: | |
| Depends on: | |
| Blocks: | |
| See also: |
Marcel Zwiers - 2014-06-20 10:29:39 +0200
Batches with over 999 jobs result in incorrect handling of the pbs/job ids. Example: qsubcellfun(@pause,repmat({0},1,1010), 'timreq',0, 'memreq',0, 'Stack',1) [..] job marzwi_dccn_c355_p10401_b1_j262 returned, it required 0 seconds and 9.3 MB job marzwi_dccn_c355_p10401_b1_j263 returned, it required 0 seconds and 10.6 MB Warning: cannot determine the pbsid that corresponds to jobid marzwi_dccn_c355_p10401_b1_j1000 > In qsublist at 89 In qsubget at 66 In qsubcellfun at 362 Warning: cannot determine the pbsid that corresponds to jobid marzwi_dccn_c355_p10401_b1_j1001 > In qsublist at 89 In qsubget at 66 In qsubcellfun at 362 Warning: cannot determine the pbsid that corresponds to jobid marzwi_dccn_c355_p10401_b1_j1002 > In qsublist at 89 In qsubget at 66 In qsubcellfun at 362 [..]
Marcel Zwiers - 2014-06-20 11:22:34 +0200
Somehow putting a dbstop at line 69 of qsublist does not stop matlab, but I think I found the bug at line 100 of qsublist case 'del' sel = strmatch(jobid, list_jobid); If jobid='100', strmatch (which is, btw, deprecated and will be removed in future versions) will match both '100' and '1001'. Solution: Use either: sel = strmatch(jobid, list_jobid, 'exact'); or better even (= future proof): sel = strcmp(jobid, list_jobid); if any(sel) NB: The same strmatch-patch should be applied elsewhere in the code too
Robert Oostenveld - 2014-06-20 11:42:33 +0200
(In reply to Marcel Zwiers from comment #1) indeed! >> strmatch('100', {'1000', '1001'}) ans = 1 2 >> strcmp('100', {'100', '1000', '1001'}) ans = 1 0 0
Robert Oostenveld - 2014-06-20 11:49:54 +0200
this should fix it mac011> svn commit Sending qsubfeval.m Sending qsublist.m Transmitting file data .. Committed revision 9643.